YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83767057
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.99
Transmembrane Helix	51	73	0.92
Cytoplasmic	74	80	0.88
Transmembrane Helix	81	101	0.93
Non-Cytoplasmic	102	142	0.95
Transmembrane Helix	143	163	0.93
Cytoplasmic	164	170	0.85
Transmembrane Helix	171	193	0.89
Non-Cytoplasmic	194	205	0.84
Transmembrane Helix	206	226	0.92
Cytoplasmic	227	239	0.85
Transmembrane Helix	240	259	0.90
Non-Cytoplasmic	260	271	0.75
Transmembrane Helix	272	292	0.92
Cytoplasmic	293	300	0.83
Transmembrane Helix	301	319	0.92
Non-Cytoplasmic	320	325	0.60
Transmembrane Helix	326	345	0.88
Cytoplasmic	346	356	0.87
Transmembrane Helix	357	376	0.88
Non-Cytoplasmic	377	403	0.86
Transmembrane Helix	404	428	0.92
Cytoplasmic	429	561	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIKAPFVP DYASYNWTGA PSNYDSLATN ELGGDSRVEN VNKWFQSGDQ AYIIVASAMV  60
   61 MVMIPGLGFL YSGLARRKSA LSMIWACMAS FSVVTFQWYF WGYSLAFSPT ATNGYIGNLR 120
  121 NFGLMKTLAD PSPGSVLVPN LLYAFYQMQF CGVTAAIIMG AVAERGRLLP AMVFVFVWAT 180
  181 IVYCPLACWV WNVNGWAMNY GVLDYAGGGP VEIGSGFSAL AYSMVLGRRQ ERMMLNFRPH 240
  241 NVSLILLGTV FLWFGWLGFN GGSAFGANLR ATMACWNTNL TAAFGAISWV LLDWRLARKW 300
  301 SMVGWCSGTI SGLVAATPAS GFITPWASVI LGIVTGIVCN YSTKVKYWIR IDDSMDVLAE 360
  361 HGIAGIVGLI FNALFADDAI VGLDGVNTGS KMGGWLIHNY KQLYIQIAFI VASAAYAFVV 420
  421 SAIIAYAINA IPGLKLRASE EAELLGMDDD QLGEFAYDYV EVRRDYLAWT PQKHDQLEDG 480
  481 HHIPAAARYG IGEHSEMMLD GHTPIGIDSR GCSEGDSGIQ EIKMSPAPAP AMAPAPRQVA 540
  541 EQHPAHEGSI PPSVEEDEKT Q