YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83766858
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAEPVPLT TREAASGLLG SISLTCWIFV LVPQLIENYR NGNAEAISLV FLAVWFVGDV  60
   61 TNLIGGLWAG LVPVIVAIAV YFCIADGVLI GQCLYYKMRN SRLQAFHRRR SSVETPDPTT 120
  121 PLLGRRFSDS LREGPASRRR SCSSQHRDGH ANGPDDTLAK IVEENEVGRS AWVKNFSSVL 180
  181 AICVIGMGGW TIAWQSGVWQ PAPQEDAGGA EIAVGAQVVG YFSAICYLGA RLPQIYKNWK 240
  241 DKSCEGLSLL FFILSLLGNL TYGAGILCHS TEKNYIVTNI PWLLGSLGTM VEDITIFIQF 300
  301 RLYAVADSTA AGP

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.77
Transmembrane Helix	14	36	0.84
Cytoplasmic	37	45	0.72
Transmembrane Helix	46	69	0.75
Non-Cytoplasmic	70	73	0.62
Transmembrane Helix	74	96	0.88
Cytoplasmic	97	175	0.97
Transmembrane Helix	176	194	0.94
Non-Cytoplasmic	195	209	0.84
Transmembrane Helix	210	230	0.89
Cytoplasmic	231	246	0.86
Transmembrane Helix	247	268	0.90
Non-Cytoplasmic	269	279	0.81
Transmembrane Helix	280	300	0.69
Cytoplasmic	301	313	0.68