YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169768798
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.95
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	381	0.99
Transmembrane Helix	382	401	0.93
Cytoplasmic	402	416	0.87
Transmembrane Helix	417	438	0.92
Non-Cytoplasmic	439	443	0.78
Transmembrane Helix	444	465	0.89
Cytoplasmic	466	549	0.98
Transmembrane Helix	550	570	0.94
Non-Cytoplasmic	571	575	0.91
Transmembrane Helix	576	595	0.93
Cytoplasmic	596	614	0.79
Transmembrane Helix	615	635	0.83
Non-Cytoplasmic	636	641	0.73
Transmembrane Helix	642	662	0.82
Cytoplasmic	663	801	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHRGSFFFF LVVFYLLLSS QSHPPLISQD RERQREIARE KDALRLLNES KYGDFNPPTD  60
   61 RWLPFPGVRK NDSYAWELLS EVQDRARYQL RSAISNAGLE VPKGLDDPAE SQALNLTELL 120
  121 LPVYRNATGK LRGDWVRRKL EKAHRPLNTT AIALENEYFT HEFSHNVTGN TGSFYLDLRE 180
  181 GGGEELRLRN GHVREIRATL AVENGDFWGN TWYLPLFGIH FPETGGIILT TTSEKFGGIF 240
  241 TLPHLALTSD AYDLSHQLLM KSLSDAISEK QNRAPTLFPW SSLVGAEQVE FPAPKCEHIV 300
  301 YLQQHPIAVH DYLADRQVIE QIEQELRYPM GAPIPSPPLM VMSAVVFSPD CGYVLETKGA 360
  361 PDYPPTEALY LSGPKLEELG KYSARLIFVI CGISVAQIAL LMRQVKEAST PSTRSRISFY 420
  421 TIALMAFGDS FLLVFMLLEL YPAVSFLLLT TASFLTFLSV SYIGMKFMME IWAVQAPERR 480
  481 EQDRRSNPSA TTARPATLPL PATTRLRDTG ATPIILTPDQ DPPEEEDEPP PNRSTTPTAR 540
  541 ETRSDVGAMY ARFYFILFVM LIISIWSFLW PNRLGALYAR ALGFVYLSFW TPQIYRNVMR 600
  601 NCRKALRWDF VVGQSFLRLF PFMYFLTVSG NVLFIRPDTT TALALAGWVW IQVWILASQD 660
  661 ILGPRFFVPR GWAPPAYDYH PIVRDAAGSD ADLESGGVLP IGALRADERD FDTKEDDKQR 720
  721 PKDKKKAVFD CAICMQEIEV PVLAAPGGAG GSSMTDGATS ILSRRAYMVT PCRHIFHSTC 780
  781 LESWMRLRLQ CPICRESIPP V