YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83775300
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKLHVTLT TTLTLVEQFH LTLSSPSGNP ASTELSGRDA LPLLSASSTA LKSQVTKLSL  60
   61 LAITSPFTSS AVGSVLSNLN GSVLPSFVTA ALLITPTDHT KAFQAEALSL TKTGLNELSS 120
  121 LVKEVQLIAE RNDEVQDHME KKGIELSQNE KDLVTVATGR VWGACDALID LASNGVVGFI 180
  181 IRRVEEWRDL VRDAVEEIDE WNPDEEGDEF FDELLSDDGK QSLGKDSEGE SSEDSSDSED 240
  241 TAVLYELKRT SIRLLKPVVQ IYPAIITNRL KKVPEFSPSL ANQLESLMTN LHRIPEQVDE 300
  301 VAGALYEGDL ERSIRYLKRT KDCAVEAVKL VVLPWVEQNV TDSQQNAEDK FTNWSKTWLK 360
  361 VIDEVSKPLD DIKEAKLQ

Type	Start	End	Confidence
Signal Peptide	1	24	0.59
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	378	0.98