YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCD4_ASPOR
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.52
Transmembrane Helix	7	24	0.49
Non-Cytoplasmic	25	467	0.98
Transmembrane Helix	468	490	0.82
Cytoplasmic	491	498	0.88
Transmembrane Helix	499	519	0.92
Non-Cytoplasmic	520	525	0.75
Transmembrane Helix	526	542	0.88
Cytoplasmic	543	554	0.79
Transmembrane Helix	555	578	0.85
Non-Cytoplasmic	579	584	0.84
Transmembrane Helix	585	605	0.90
Cytoplasmic	606	614	0.78
Transmembrane Helix	615	635	0.92
Non-Cytoplasmic	636	640	0.88
Transmembrane Helix	641	661	0.95
Cytoplasmic	662	680	0.89
Transmembrane Helix	681	701	0.84
Non-Cytoplasmic	702	718	0.68
Transmembrane Helix	719	736	0.94
Cytoplasmic	737	743	0.70
Transmembrane Helix	744	764	0.82
Non-Cytoplasmic	765	767	0.51
Transmembrane Helix	768	787	0.61
Cytoplasmic	788	837	0.58
Transmembrane Helix	838	859	0.87
Non-Cytoplasmic	860	876	0.53
Transmembrane Helix	877	901	0.81
Cytoplasmic	902	907	0.54
Transmembrane Helix	908	931	0.86
Non-Cytoplasmic	932	939	0.53
Transmembrane Helix	940	963	0.83
Cytoplasmic	964	1022	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVGRVGFL TLAVVFHLMY AYSIFDIYFV SPIVSGMRSF GVEREASAEA PAKRLVLFVA  60
   61 DGLRADKAFQ ALPDPDAPSD LENDEPIYLA PFIRSRALSH GTFGISHTRV PTESRPGHVA 120
  121 LIAGLYEDVS AVTTGWKLNP VDFDSVFNRS RHTWSWGSPD ILPMFKEGAV PGRIDADTYG 180
  181 EEAEDFSADA TKLDIWVFDK VKELFASAKK DPELDAKLRE DKLVFFLHLL GLDTTGHAYR 240
  241 PYSKEYLRNI KLVDKGVQEI TQLVEDFYGD GKTSFVFTAD HGMSDWGSHG DGHPDNTRTP 300
  301 LVVWGSGVAS PRYTHEGTIT GHEDGVSADW GLDSVQRNDV AQADVAALMA YLVGLDFPTN 360
  361 SVGQLPLGYL DTSPKDKALA ALANAQGVLE MYRVKEEQKR DALLRYTPFE PLADNGETSV 420
  421 EARLERIKTL ISNKSYDASI QLSSELLLTA LEGLRYLQTY DWLFLRTIVS LGYLGWIAYA 480
  481 LTTVIDLHVL HGKSESNRTT FSIMFFSSIL VALFSVLLYQ GSSWRYYLYA LFPIFFWEEV 540
  541 FARRKALLAG REILLGHVHS VSGYFAFAIQ LLLYVGVLEA LVQSYFHRDI FTVCFILGGF 600
  601 WPITYGTKFL GQHKLLSASW ALGCFLMSIF TLLPANKVED MMMISCGSLL MFLTGLLYLI 660
  661 FERSILGQKR SSDPNSVVSS CGSRTIMGAQ VGMILLALIV TRSSVASLQA KQGLPLGNQV 720
  721 LGWAILVSSL LLPFLHRLYP NSHYLHRLMV IFLTFSPIFI ILTISYEGLF YFVFCMTLLA 780
  781 WVRLEQAIYI HTTAPTREQD HSVANGSLPA KKPSPGNTVV VEGQPYRYRT LSVSDARVAL 840
  841 FFFFLLQSGF FSTGNIASVS SFSLDSVYRL IPIFNPFAQG ALLILKLLIP FAIISANLGI 900
  901 LNHRLEVAPS ALFMVVMSIS DVMTLNFFYM VRDEGSWLEI GTTISHFCIA SFLCTFVAVL 960
  961 EFLSELFISG VDFGHPATTV GSAVAKAVNG SVACGHSPDS DISGEDSTSV GITAKADPDA1020
 1021 RS