YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169780016
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	104	0.92
Transmembrane Helix	105	123	0.83
Non-Cytoplasmic	124	142	0.82
Transmembrane Helix	143	163	0.90
Cytoplasmic	164	171	0.65
Transmembrane Helix	172	189	0.81
Non-Cytoplasmic	190	194	0.62
Transmembrane Helix	195	216	0.83
Cytoplasmic	217	229	0.72
Transmembrane Helix	230	248	0.92
Non-Cytoplasmic	249	253	0.59
Transmembrane Helix	254	272	0.86
Cytoplasmic	273	285	0.74
Transmembrane Helix	286	309	0.89
Non-Cytoplasmic	310	612	0.90
Transmembrane Helix	613	633	0.90
Cytoplasmic	634	650	0.89
Transmembrane Helix	651	669	0.83
Non-Cytoplasmic	670	676	0.68
Transmembrane Helix	677	699	0.79
Cytoplasmic	700	712	0.79
Transmembrane Helix	713	734	0.88
Non-Cytoplasmic	735	859	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPKSKNALE VQPPTKSTRS SSRSPRPKNR KKAPVETLNY GSDGVKDNSI FSLPTSDYKA  60
   61 LVLVTLVATA VRLFRIYQPT SVVFDEVHFG GFASKYIKGR FFMDVHPPLA KLLITLAGWL 120
  121 AGFNGDFDFK EIGKDYLAAG VPYVAMRMLP AIMGVLTVSL MFLTLKASGC RTTTAVLGAG 180
  181 VVIFENALVT QSRLILLDSP LVFFTALTAM SFTSFTNQQE LGPSHAFRGP WWFWLAATGL 240
  241 CLGATLSVKW VGLFTVAWVG SLTIIQLWVL LGDTNNVTPR LWFKHFFARF FCLIVIPLGF 300
  301 YCGMFAIHFL CLVNPGEGDG FMSSEFQATL NSKAMQDVPA DVAFGSRITL RHHNTQGGYL 360
  361 HSHNHMYPTG SKQQQITLYP HKDENNVFIA ENQTQPLGPD GEIAGPFAWD NITAEYIEDG 420
  421 AIIRLNHLMT QRRVHSHDER PPVTEADWQY EVSAYGFEGF AGDANDMFRV EIVKSMSEGE 480
  481 EAKKRLRTIQ SKFKLVHVMT GCVLFSHKVK LPDWGWEQQE VTCAKGGTLP NSVWYIESNS 540
  541 HPMLPADAEK VNYRNPGFLG KFWELQKVMW TTNAGLTESH AWDSRPPSWP TLLRGINFWG 600
  601 ADHRQIYLLG NPLIWWSSTL AIGIYVLFKG ISILRWQRNC ADYRNVNFKR FDYEVGTSVL 660
  661 GWAFHYFPFY LMARQLFLHH YLPALYFAII TLCQEFDFLA NRIHALGLAS RPAIGKALAG 720
  721 IFLALSIFTF TLYSPLVYGN PWTPDACRKV KLLDTWDFDC NTFHTDEEAE EADDANVTPE 780
  781 PQPPRAKARV EYRDQDGNIL DEKLVAALAK EGKVSFETRH ETRTRLEHGH EVEMINGQVA 840
  841 PPHPDVEAKP ASEGNEATN