YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169776955
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISFISNRSS SDEPVISAQT AAFFSICLTL VYVVPFYVSS TTRPSPTLSR DAPSVIRARI  60
   61 KAVTLSCVGS TLAVSWLIIA KGNVSLLEAL RFLGWWPVGF AEVLRSLLLT AILFAGPLFE 120
  121 RGIAEGEWRD WIKGNRIPET LRGWIGWRNY VAGPVTEEVM FRSAIIPLHI LAKVSPGRIV 180
  181 FTAPLYFGIA HVHHFYEFRL THPDTSVLAA LLRSVFQFGY TTIFGWYATF IYLRTGSLLA 240
  241 VILAHAFCNW CGLPRLWGRV EAGVPLGPPL VKGKNDTDRG PVYAYNQLGI GWTIAYYAIL 300
  301 VGGATSFYYT LWPLTESSSA LVTFTGP

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.89
Transmembrane Helix	18	39	0.90
Cytoplasmic	40	59	0.88
Transmembrane Helix	60	80	0.94
Non-Cytoplasmic	81	97	0.85
Transmembrane Helix	98	119	0.86
Cytoplasmic	120	173	0.90
Transmembrane Helix	174	195	0.74
Non-Cytoplasmic	196	208	0.74
Transmembrane Helix	209	228	0.58
Cytoplasmic	229	229	0.27
Transmembrane Helix	230	257	0.70
Non-Cytoplasmic	258	288	0.53
Transmembrane Helix	289	312	0.85
Cytoplasmic	313	327	0.54