YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169764100
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	58	0.49
Transmembrane Helix	59	76	0.64
Cytoplasmic	77	109	0.68
Transmembrane Helix	110	125	0.47
Non-Cytoplasmic	126	142	0.51
Transmembrane Helix	143	165	0.78
Cytoplasmic	166	175	0.49
Transmembrane Helix	176	210	0.66
Non-Cytoplasmic	211	226	0.55
Transmembrane Helix	227	260	0.75
Cytoplasmic	261	280	0.75
Transmembrane Helix	281	304	0.87
Non-Cytoplasmic	305	600	0.81
Transmembrane Helix	601	622	0.95
Cytoplasmic	623	638	0.80
Transmembrane Helix	639	660	0.83
Non-Cytoplasmic	661	669	0.65
Transmembrane Helix	670	688	0.93
Cytoplasmic	689	696	0.80
Transmembrane Helix	697	719	0.90
Non-Cytoplasmic	720	741	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEMDSASST GVNLASDMRR RNVPHTEGLR RKPDGTEESK RKPQLKANPS VSILDNWEPL  60
   61 IMPILLTAVA IFTRMYRIGR SNIVTWDEAH FGKFGSHYLK REFYFDVHPP LGKMLVGLSG 120
  121 YLAGYNGSFE FKSGEKYPEE VNYTFMRVFN AAFGVVCVPL AYYTARELGF RRATIWLVSL 180
  181 MVLLENSYAT ISRFILLDSM LLCFTFTTTL CWAKFHRLQY ASFSIEWFVW LFLTGISIGC 240
  241 VCSVKWVGFF CTALVGLYTI EDLWNKFGDL KISEVVFAKH LMARVVGLII IPVLVYVFSF 300
  301 YLHFLVLENS GPGDAQMSSL FQANLRGTEV GKDSPLEIAL GSRVTLKNMG YGGGLLHSHI 360
  361 QTYPEGSTQQ QVTCYHHKDA NNDWFIYPSR REPEYDPSAP LKFVGDGDVI RLIHGQTGRN 420
  421 LHSHAISAPI TKSHYEVSCY GNVTIGDDKD HWLVEVVDDV ASKDRSKIRT LTTAFRLRHP 480
  481 VLGCYLRAGN VNLPQWGFKQ IETTCVKENK PSDVYTHWNV ESHFNDRLPP GDPGSYKSPF 540
  541 LKDFIHLNVA MMTSNNALVP DPDKQDDLAS KFWQWPILNV GLRMCSWDDN TIKYYLLGNP 600
  601 FVYWGSTFSL GIFGLLVIWY LVRWQRGYNE LSQADINHIH YSGLYPVIGW ILHYLPFIVM 660
  661 GRVTYVHHYY PALYYAILTF GFCVDWLTQT MDVKSRWVIY SLLYAIIVGM FVHFRVLVFG 720
  721 IEGSSQQWGH LDWLSGWRIA N