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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CHO2_ASPOR
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRGLSTSTR IDDEGLRERN VASQSTSTLS PEALTATGDV ELKDKTGKDC KTFGRTPDGT  60
   61 VFTVPQTHDM VSQLLSPSEP KNLSDVIVLA ILGAHILLLW QLPTGAKVPV FAIIYLFWRA 120
  121 AYNAGIGWLL HNQSHHKTLV RWAEKTKVFV NPATGKNPHP NVYNFFKREL ETKIPHDYSF 180
  181 DEAPIEYNTW LVFRRLVDLI LMCDFVSYCL FAIACSHHPV NESVLMTVLR WSAGIVLVLF 240
  241 NLWVKLDAHR VVKDFAWYWG DFFYLIDQEL TFDGVFEMAP HPMYSVGYAG YYGISLMAAS 300
  301 YKVLFISIIA HAAQFAFLVL VENPHIDKTY NPPPSRKRSA EQETGSVSSR TADSPIAPTP 360
  361 IDEQIPHAPT FSSSPPQSVH ELLGLHNLDL YRITDTSSVL IQFLVFALTV LTPSTPWYQF 420
  421 LFVANAAVWR LWFSIGVGYM LHRQSNHKAW TRHFVKYGET PQEAWNQWKG TYHLSMIMCY 480
  481 ASFIAAVWKM YNFPADWGYG LVLLRHVLGA GLISLQIWTS VSIYESLGEF GWFYGDFFFD 540
  541 GSSKLTYNGI YRFLNNPERV LGLAGVWGAV LITSSGAITF LALLSHILSL AFIQFIERPH 600
  601 MQKLYGQSLR QDAGLVKSLK KSLPPTLRQL HGSVDKIFDE SFEFIEEIIE TARPKLANGV 660
  661 NTFVKDTTAL FQSYPARVTI SRIDEDLAGY DSRDYSLEVE GTDSSSLAEH DQSTGREGAN 720
  721 ARMPLDRRGD LKNLVFEYGA PIRVKWTAPL NHSKKDWIGL YKVTDNTSRE VTRVSSQGRW 780
  781 IAVNEGAYDN LTCEKGIVKS DVVIKATQQQ DGDKRDLATG EVIFSGDKLF WTQGVFEFRY 840
  841 HHNAKHNVMA ISRPFEIRIG RYEEEDDHEL TQASVEKSLL PVIRSCFDRD PEIAPEAVDE 900
  901 PFGSLVERDG KFAKRVVFAV HQMFGVEFAP GVVQADGTVR NLAWRVCNAK RVLAPYSMSR 960
  961 NGASTPTERK E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle