YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83769827
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.97
Transmembrane Helix	11	29	0.95
Non-Cytoplasmic	30	36	0.80
Transmembrane Helix	37	58	0.93
Cytoplasmic	59	81	0.88
Transmembrane Helix	82	103	0.93
Non-Cytoplasmic	104	139	0.96
Transmembrane Helix	140	159	0.95
Cytoplasmic	160	170	0.81
Transmembrane Helix	171	192	0.89
Non-Cytoplasmic	193	210	0.83
Transmembrane Helix	211	233	0.84
Cytoplasmic	234	239	0.73
Transmembrane Helix	240	261	0.85
Non-Cytoplasmic	262	272	0.85
Transmembrane Helix	273	295	0.90
Cytoplasmic	296	303	0.83
Transmembrane Helix	304	323	0.91
Non-Cytoplasmic	324	426	0.54
Transmembrane Helix	427	445	0.92
Cytoplasmic	446	465	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSSLSRKE TWRLLMLVGI CAGILLNTFQ DEGAPLVASI AFTGIVFAVA YSLIKWLGPV  60
   61 FMKAGLKGRD MAKPKRPEIP ETMGAVCAVV YLLALIFFIP FAFYKDIVAA TSGGGNRDVV 120
  121 LEVHHVETGR MLHRFPHGRL ASYLSGLLSL QCIVILGLGD DLLDIRWRHK VLIPAFGAIP 180
  181 MLIVYFVDFG VTQVVVPVPL QPYLGAFVDL GWLYYVYMAA VAIFCPNSIN MLAGINGVEV 240
  241 AQSLVIAILL IANDALYLAP ITPYPHPATD SHLFSLYFLL PFVGVSLALL LHNWYPSKVF 300
  301 VGDTYCYFAG MVFAVVGILG HFSKTLLLLF IPQIFNFLYS TPQLFKLIPC PRHRLPKFNA 360
  361 LTGQLDASVT EWTVPPSPLI AAGLELLHQL RLVRVTKNDH GQIVESTNLT ILNLWLVWMG 420
  421 PMKENRLAWN MVAVQVVCGL FGLFVRHRLA LLVFREDNRA SWYQL