YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169773577
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.78
Transmembrane Helix	8	28	0.76
Non-Cytoplasmic	29	89	0.70
Transmembrane Helix	90	108	0.46
Cytoplasmic	109	128	0.61
Transmembrane Helix	129	155	0.70
Non-Cytoplasmic	156	180	0.61
Transmembrane Helix	181	202	0.90
Cytoplasmic	203	217	0.84
Transmembrane Helix	218	242	0.84
Non-Cytoplasmic	243	251	0.70
Transmembrane Helix	252	272	0.54
Cytoplasmic	273	278	0.46
Transmembrane Helix	279	300	0.84
Non-Cytoplasmic	301	306	0.37
Transmembrane Helix	307	327	0.69
Cytoplasmic	328	347	0.47
Transmembrane Helix	348	371	0.88
Non-Cytoplasmic	372	379	0.60
Transmembrane Helix	380	404	0.86
Cytoplasmic	405	423	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVDRRQAAV FAGAFALRLL LLVLFPSLPD LLTGRVEVST PVTSFKRLQE GLFLYTRNVS  60
   61 PYDGGVFHQA PLFLPIFALL PNARELPLPT ALFYSLIDLI NANALITISD SGQAVSGRLF 120
  121 SALRKHIRWD GVSVAAWFLF NPFTIATCLG RSTSVFTTTG ILYALSSAVS GNTLNAMLSL 180
  181 GFASYLSIYP ALLFIPLVLL CYDRRAQGPK PPSGVAIFAI QHMAVFLLSI AGLLGISCLV 240
  241 VGDFSQFISA TYGFQLLVPD LTPNVGLWWY FFIEMFDSFR EFFLGVFWLH LAAYVGGLTV 300
  301 RLRRQPLFVI TSLLGIFAVF KPYPSISDAS LYFALLPLYR HLFPLMRYTF FAVSALLYAT 360
  361 LLGPAFYHLW IYAGSGNANF FYAITLVWSL GLSILLADTI FAVLRDEWEQ ENPEMRGKEA 420
  421 RQV