YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169768042
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACSAQSVTI ESYPEEAAVS SAYATPSEET TALLRDRRRR HSFHAARKLS CDYDADAVFL  60
   61 RVELFLAELE RRLHWLEDYR RSHMVQIDAS LRRGYATLEA VRDSCSYASG ELMGGGKKRA 120
  121 KILVETLEDG YKDALATKET LEQKAQAGVR LMESFLSELE ARAHAVRDRG FYGTLDDGWK 180
  181 AVDSKLVHAR EVVDEGMERA RKAKDALREN IDQAIALAQE KRLIAYADLP HPWRVNPHIL 240
  241 EGYRFTHSKV ECFTSMFTFS NELVNIWSHL IGLFIVLSVA FYFYPLNPNF HLSTKTDVLI 300
  301 AAVFFFAACK CLVCSTLWHT MNSIANQGLM ERFACVDYTG ISMLVAASIV TTEYTAFYCE 360
  361 PVSRWTYILL TMSLGIGGVI LPWHPTFNRA DFAWARVAFY VTLALTGFAP LAQLTYTRGF 420
  421 AWCLYFYAPV VKSILVYFVG ACIYASQVPE RWRPGLFDYV GGSHNIWHFA VLGGILFHYC 480
  481 AMQDLFAGAF QRAKGECPHL TS

Type	Start	End	Confidence
Cytoplasmic	1	262	0.55
Transmembrane Helix	263	286	0.87
Non-Cytoplasmic	287	297	0.51
Transmembrane Helix	298	320	0.91
Cytoplasmic	321	333	0.50
Transmembrane Helix	334	357	0.81
Non-Cytoplasmic	358	364	0.47
Transmembrane Helix	365	385	0.93
Cytoplasmic	386	391	0.48
Transmembrane Helix	392	416	0.83
Non-Cytoplasmic	417	422	0.47
Transmembrane Helix	423	446	0.83
Cytoplasmic	447	463	0.40
Transmembrane Helix	464	482	0.87
Non-Cytoplasmic	483	502	0.42