YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83766233
Protein type:	Globular with Signal Peptide
Type Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSIRSARL VRNNAALRPS LIARPRFTGA LGAVSAANLR INGRGLPSHI QALAILVPHH  60
   61 GYATEQSTST SSSSFPPPGF NAEQAKKPIV PEPAKNDQQV VPKSELPVTP KNNAQSKDKS 120
  121 SEAGAVKEAA EEKKEQKKLT IGQKIKKEAQ HYWDGTKLLA TEVKISSRLA LKMAAGYELS 180
  181 RREHRQLQRT VKDLGRLVPF SMFVIIPFAE LLLPVALKLF PNMLPSTYEG QKAREKKALN 240
  241 LSSTRKEVSG FLKDTLKESG LPVTAATVKN EEFAEFFKKI RTTGEAPSTE DVIKVCKVFK 300
  301 DDLTLDNLSR PQLVGICKYM NLNSFGTDAM LRYNIRHRMR QIKRDDRAIF YEGVESLSVP 360
  361 ELQMACASRG IRTHGVSPAR LRDDLSTWLD LRLKQGVPST LLVLSNAYVY AQGGKETEMS 420
  421 SQIEALQAVL SSIPEELFHE IELEVHNAEG AATNKQRLEV IKEQQELIEE ENEQNSENEE 480
  481 KGVAAPKDHE DIDDKEEVTI EAKYQGQSGE AAEAVAEGEK VEEAQLKDPS TQAKDGKKET 540
  541 TSA

Type	Start	End	Confidence
Signal Peptide	1	36	0.49
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	543	0.89