YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169766714
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVALWNKKKD DPDREESQTR DEESSSRNHR EPQYREPDER TRLLPRDHAA YLRPDDPAVS  60
   61 PYNLWSVRAL RALSSLFLVI SFIWWAFLLV SIFVSPPMMH TRGSGFFSFA YTSLTVGYLI 120
  121 IALLFFSVPS KPMTICGAIL FVFLLVDMCI ILGVAHIRVE EGWVGIASVV WATFISIYAI 180
  181 GQNRYVAWGK KEEEERLTGR EETRRPLREW LAVLIATIIM VVLAIVSILF TATLIIRIQD 240
  241 SSLAAPGKKY YVNGNHYQVH LDCVGNPGRK TEDGDRIPTV LLEGNHGPVE HTLQPFIDDA 300
  301 YRNGSIERYC YWDRPGYAWS DNAPSPYSAG MAADSLSEAL ALAGEEGPWV LVSAGVGGIY 360
  361 SRIFASRHLL EVDGIMLIDT LHEDYLDSLG SPGRGFILWI RGVLSPLGLD RLAGAIFKGR 420
  421 TREDRVIGRS AYQTAKVIRA KLQENLVAKS MTASEIQTAR HVQMPDTPLT VISSGVEVRK 480
  481 SEKWRKAQEE LTKVTKNLKN WDIVRGAPHE VWRSAEGRSI VEKRLKQMVK GKGKK

Type	Start	End	Confidence
Cytoplasmic	1	72	0.98
Transmembrane Helix	73	94	0.89
Non-Cytoplasmic	95	106	0.78
Transmembrane Helix	107	127	0.94
Cytoplasmic	128	134	0.84
Transmembrane Helix	135	157	0.92
Non-Cytoplasmic	158	162	0.87
Transmembrane Helix	163	181	0.93
Cytoplasmic	182	209	0.88
Transmembrane Helix	210	233	0.93
Non-Cytoplasmic	234	535	0.97