YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238504070, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPSLTDLE QRNRLPTLFE VLSRRTLAPV DLFSFYIYMR DQQRSVDYLD FWLDVSQHMS  60
   61 LCRHYVRELR RSVLVATPDL EKADSKGSSD ALGNLETFGD IPLVEAGPSG LRHGNHDLDD 120
  121 QDADQRLSAF LRADGHNPGH SPQDSLGSQN AARTPSNEQP PRPSSGTRND STSPGHTVAR 180
  181 ADIRASAEKI LYTYLLPGAE REIVLPEDMV STIINLVEDD GRDDPEVFDP AKDYVFQAME 240
  241 RDAFPGFLQA KALGNLVPLS TIARLAFALI SFGGGFWGAF YVVLRDKPRH IRCWVCCSGL 300
  301 PGFCCASTLT IMQLILPFIV ASYFIVSYQY KIDPVMAFLG YSEYTFMNWS PIREPYVRKL 360
  361 LNKRATATIL IAAFVATALS VLFIFVPGTM L

Type	Start	End	Confidence
Non-Cytoplasmic	1	261	0.97
Transmembrane Helix	262	284	0.90
Cytoplasmic	285	292	0.90
Transmembrane Helix	293	316	0.86
Non-Cytoplasmic	317	331	0.66
Transmembrane Helix	332	352	0.73
Cytoplasmic	353	365	0.84
Transmembrane Helix	366	386	0.95
Non-Cytoplasmic	387	391	0.69