YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169764401
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSSIVAGA SLFASSVIAA DLDPIIIKGS KFFYKSNDTQ FYIRGVAYQQ EYSGPDSSAN  60
   61 SFKDPLADAD ACKRDVPYLE KLGTNTIRVY AIDPKSDHKE CMSLLSDAGI YVIADLSSPG 120
  121 DSINRNEPKW DNDLYNRYVT VVDELSQYSN VIGFFAGNEV SNSENTTSAS AFVKAAVRDT 180
  181 KQYIKAKNYR SMGVGYATSD DSSIRKNMAN YFNCNGADDS IDFWGYNVYS WCGDSNYEKS 240
  241 GYASRTEEFK DYTVPVFFAE YGCNAVQPRK FTEVQALYGD KMADVWSGGI VYMYFQEENN 300
  301 YGLVSVDGNK VSTKADFSYL SKELASATPS GTKKGDYQPT NTALQSCPTV DDKWLATSSP 360
  361 LPPSPNQDLC SCMEESLSCA LKDKVSGEQL DKLFGTVCGY DVCDGITTNA TTGKYGAYSV 420
  421 CTPQQQLSYA INLYYQNQKA KGNGDKACDF NGAATTQSSK SGGSACSALL KEAGTSGTGT 480
  481 VTSSPTGTAG SGASDGAAAS SSGSAGGLVA PSSVNVGIFQ LGAYVVTAMV AGAGMIVL

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	516	0.99
Transmembrane Helix	517	537	0.53
Cytoplasmic	538	538	0.52