YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92019691
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.86
Transmembrane Helix	20	39	0.77
Non-Cytoplasmic	40	59	0.80
Transmembrane Helix	60	82	0.82
Cytoplasmic	83	149	0.96
Transmembrane Helix	150	170	0.94
Non-Cytoplasmic	171	189	0.82
Transmembrane Helix	190	209	0.95
Cytoplasmic	210	216	0.88
Transmembrane Helix	217	241	0.87
Non-Cytoplasmic	242	266	0.93
Transmembrane Helix	267	286	0.88
Cytoplasmic	287	295	0.65
Transmembrane Helix	296	319	0.82
Non-Cytoplasmic	320	338	0.89
Transmembrane Helix	339	365	0.82
Cytoplasmic	366	389	0.87
Transmembrane Helix	390	410	0.89
Non-Cytoplasmic	411	418	0.73
Transmembrane Helix	419	441	0.91
Cytoplasmic	442	447	0.80
Transmembrane Helix	448	468	0.94
Non-Cytoplasmic	469	475	0.78
Transmembrane Helix	476	495	0.94
Cytoplasmic	496	512	0.90
Transmembrane Helix	513	534	0.81
Non-Cytoplasmic	535	552	0.65
Transmembrane Helix	553	571	0.37
Cytoplasmic	572	785	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEIGGAAR QVQWKSYCKT LSVLAFQSFG VVYGDLSTSP LYVYRSSFSG RLNSYRDETT  60
   61 IFGLFSLIFW TLTLVPLLKY VIIVLSADDN GEGGTFALYS LLCRHAKFSL LPNQQAADEE 120
  121 LSTYYQPGTG RTAVSSPFKR FLEKHRKLRT CLLLFVLFGA CMVIGDGILT PTISVLSAIS 180
  181 GLQDPATGGL ADGWILLIAC VVLVGLFALQ HRGTHRVAFM FAPIVVLWLL SIGIIGLYNI 240
  241 IHWNPRICLA LSPHYIVKFF KTTGRDGWMA LGGVLLATTG TEAMFADLGH FTAASIRLAF 300
  301 VGAIYPSLVL QYMGQAAFLS RNMSAVHDSF YLSIPRPVFW PVFVIATLAA IVGSQAIISA 360
  361 TFSIVKQCLA LGCFPRVKVV HTSRWIHGQI YIPEINWILM VLCLAVTLGF RDITVIGNAY 420
  421 GLACITVMFV TTWLMSLVII FVWQKNLLIA LLFLAFFGSI EGIYLSAAVI KVPQGGWTPI 480
  481 AMALVFMFIM YVWHYGTRRK YMFDLQNKVS MKWILTLGPS LGIMRVPGIG LIYTELVTGV 540
  541 PAIFSHFVTN LPAFHQVLVF VCVKSVPVPY VPTDERYLIG RIGPREYRMY RCIVRYGYKD 600
  601 VQKDDENFEN HLVMSIAKFI QMEAEEAASS GSYESSTEGR MAVVHTTDTT GTGLVVRDSI 660
  661 DAAGTSLSLT RSSKSETLRS LQSIYEQESG GGLSRRRRVR FQISEEERAD PQVRDELSDL 720
  721 LEAKEAGVAY IIGHSYVKAR KNSNFLKTFA IDYAYSFLRK NCRGPSVTLH IPHISLIEVG 780
  781 MIYYV