YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90576610, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.50
Transmembrane Helix	17	38	0.92
Cytoplasmic	39	43	0.44
Transmembrane Helix	44	69	0.80
Non-Cytoplasmic	70	84	0.44
Transmembrane Helix	85	106	0.88
Cytoplasmic	107	113	0.56
Transmembrane Helix	114	136	0.87
Non-Cytoplasmic	137	142	0.58
Transmembrane Helix	143	162	0.94
Cytoplasmic	163	168	0.57
Transmembrane Helix	169	189	0.90
Non-Cytoplasmic	190	220	0.56
Transmembrane Helix	221	244	0.74
Cytoplasmic	245	261	0.52
Transmembrane Helix	262	285	0.85
Non-Cytoplasmic	286	292	0.42
Transmembrane Helix	293	312	0.91
Cytoplasmic	313	317	0.40
Transmembrane Helix	318	340	0.85
Non-Cytoplasmic	341	351	0.45
Transmembrane Helix	352	383	0.73
Cytoplasmic	384	495	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQKLRQTWF SNVRGDVLAG LVVALALIPE AIAFSIIAGV DPKVGLYASF CICAVIAFVG  60
   61 GRPGMISAAT GAMALLMVTL VKEHGLQYLL AATLLCGVLQ ILAGHLKLGS LMRFVSRSVV 120
  121 TGFVNALAIL IFMAQLPELT NVTWHVYAMT AAGLGIIYLF PYVPKIGKLI PSPLVCILTL 180
  181 TAIAIYLGLD IRTVGDMGQL PDTLPIFLWP EVPLNFETLR IIFPYSAALA VVGLLESMMT 240
  241 ATIVDDLTDT TSNKNRECKG QGVANIAAGM LGGMAGCAMI GQSIINVKSG GRTRLSTLCA 300
  301 GVFLLLMVVF LGEWLSKIPM AALVAVMIMV SIGTFSWDSL RNLKEHPLST NLVMVATVVV 360
  361 VVATHNLAYG VLVGVLLASL FFANKVGHYL DIKSTLEETK SHRTYHVVGQ VFFSSADKFT 420
  421 EVFDFKEALN KVTIDLTQAH FWDITAVAAL DKVVIKFRRE GAEVEVLGLN EASATIVDRF 480
  481 GVHDKPGAID KLMSH