YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92122627
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSSSTSTT DTLHSFMEAL LIDQYLLGWI FAFLFGFLLL LNFKRKREKN NSTEFGTDHS  60
   61 NGYYIPENIA GSTDVIIVGA GVAGSALAYT LAKDGRRVHV IERDLTEQDR IVGELLQPGG 120
  121 YLKLIELGLE DCVNEIDAQR VFGYALYMDG KNTRLSYPLE EIHSDVAGRS FHNGRFVQRM 180
  181 REKAASLPNV RMEQGTVTSL VEKKGSVKGV QYKTKDGQEL SAFAPLTIVC DGCFSNLRRS 240
  241 LCNPKVEVPS CFVGLILENI DLPHINHGHV ILADPSPILF YKISSTEIRC LVDLPGQKVP 300
  301 SISNGELANY LKTVVAPQVP KQLYNSFMAA VDKGNIRIMP NRSMPADPHP TPGALLLGDA 360
  361 FNMRHPLTGG GMTVAPSDIV LIRDLLRPLC DLHDSSTLCK YLESFYTLRK PVASTINTLA 420
  421 GALYKVFCAS PDKARQEMRN ACFDYLSLGG ICSQGPIALL SGLNPRPISL FLHFFAVAIY 480
  481 GVGHLLIPFP SPKRMWLGAR LILGASGIIF PIIKSEGLRQ MFFPATVPAY YRAPPIR

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.78
Transmembrane Helix	21	43	0.88
Cytoplasmic	44	441	0.85
Transmembrane Helix	442	462	0.73
Non-Cytoplasmic	463	468	0.74
Transmembrane Helix	469	488	0.94
Cytoplasmic	489	495	0.78
Transmembrane Helix	496	514	0.90
Non-Cytoplasmic	515	537	0.78