YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92872561, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGRAILKRS KEICLIHKLT GRKTTTTTIP FSHPSSIQQQ SFKFFNPSIS THFFRTFRSH  60
   61 NTPKGHRVSK TVSAGAIHNE GLKLLVTGGS HAQKVVGIWL FGSAAWVFTM VILGGLTRLT 120
  121 RSGLSMTDWK FTGEFPPLSD EAWLQEFEKY QQSPEYKRVN KGMKIEEFKF IYWMEYGHRM 180
  181 WGRALGLMFV LPYSYFLHKG YITLRLALRV SALFGLGAGQ GLIGWWMVKS GLEEPPTEYS 240
  241 QPRVSPYRLA AHLTSAFAIY CGLFWTALSV VMPEPPAESL TWVRGAAKVK RLALPVSLLV 300
  301 GLTAVSGAFV AGNDAGHAFN TFPKMGDTWI PENILEMKPL IRNFFENTST VQLNHRILAT 360
  361 ATLISVSALW LSTRKLDIHP AVRSVIGGIF GMASVQVTLG ITTLLSYVPV SLGTAHQAGA 420
  421 LTLLTFMLLL NHTVRRPSSA LLKSLPQVVK AN

Type	Start	End	Confidence
Cytoplasmic	1	94	0.98
Transmembrane Helix	95	117	0.91
Non-Cytoplasmic	118	179	0.95
Transmembrane Helix	180	197	0.95
Cytoplasmic	198	205	0.85
Transmembrane Helix	206	228	0.90
Non-Cytoplasmic	229	248	0.97
Transmembrane Helix	249	271	0.93
Cytoplasmic	272	291	0.93
Transmembrane Helix	292	312	0.95
Non-Cytoplasmic	313	352	0.97
Transmembrane Helix	353	373	0.91
Cytoplasmic	374	383	0.85
Transmembrane Helix	384	405	0.92
Non-Cytoplasmic	406	413	0.75
Transmembrane Helix	414	434	0.92
Cytoplasmic	435	452	0.98