YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92897792
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.97
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	274	0.99
Transmembrane Helix	275	297	0.88
Cytoplasmic	298	338	0.96
Transmembrane Helix	339	363	0.89
Non-Cytoplasmic	364	371	0.82
Transmembrane Helix	372	393	0.90
Cytoplasmic	394	410	0.85
Transmembrane Helix	411	431	0.93
Non-Cytoplasmic	432	444	0.81
Transmembrane Helix	445	467	0.90
Cytoplasmic	468	488	0.97
Transmembrane Helix	489	516	0.80
Non-Cytoplasmic	517	527	0.78
Transmembrane Helix	528	553	0.89
Cytoplasmic	554	562	0.85
Transmembrane Helix	563	584	0.90
Non-Cytoplasmic	585	604	0.83
Transmembrane Helix	605	626	0.93
Cytoplasmic	627	637	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFSRSIAFS SILLLLFING SFCFYLPGVA PQDFQKGDTL QVKVNKLSST KTQLPYTYYS  60
   61 LPYCTPEKIL DSAENLGEVL RGDRIENSRY VFKMREPQMC NVVCKKLKLD AKTAKAFKEK 120
  121 IDDEYRVNMI LDNLPLVVPI KRVDQDSTVY QLGFHVGLKG QYSGSKEEKF FIHNHLAFTV 180
  181 KYHRDSLTEA ARIVGFEVKP FSVKHEYEGK WDEKTRLSTC DPHAKHTVVN SNTPQEVEEG 240
  241 KEIIFTYDVE FLESDVKWAS RWDAYLLMND DQIHWFSIVN SLMIVLFLSG MVAMIMLRTL 300
  301 YRDISKYNEL ETQEEAQEET GWKLVHGDVF RPPNNSDLLC VYVGTGVQFF GMILVTMLFA 360
  361 VLGFLSPSNR GGLMTAMLLL WVFMGIFAGY ASARLYKMFK GTEWKKISLR TAVLFPASVS 420
  421 AIFFVLNGLI WGQKSSGAVP FGTMFALIFL WFGISVPLVF VGGYVGFRKP AIENPVKTNK 480
  481 IPRQIPEQAW YMNPAFSVLI GGILPFGAVF IELFFILTSI WLNQFYYIFG FLFLVFVILV 540
  541 ITCAEITVVL CYFQLCSEDY LWWWRSYLTS GSSALYLFLY ATFYFFTKLE ITKLVSAILY 600
  601 FGYMFIASYA FFVVTGTIGF YACFWFTRLI YSSVKID