YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92897162
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTCDKGFA DSYMILNPED AHFFDIIRIL FSRNIGHRKF VDSNAEGDVE GSFRGRWLIF  60
   61 ISIVLQKVLL FIAKPLAMIG YWVEMLINLI ALNGGITMII INFLSGHLEV PNPKSSKYLS 120
  121 CIGNLDSRVN MDILKREDNK YYVSLAMMAS KAVYENEAFL KYTIKYDWKM EYVGFFDCWN 180
  181 EYQERATTQV LILLDKFKDR DTYVVAFRGT EPFDADAWCT DLDISWYGIP GVGRAHGGFM 240
  241 KALGLQKNLG WPKEIERDEK LAPLAYYVIR DILRKGLSEN PNAKFIITGH SLGGALAILF 300
  301 PTIMFLHDEK LLIERLEGIY TFGQPRVGDE RYTQYMTQKM KENRITYCRF VYCNDIVPRL 360
  361 PYDDKDMLFK HFGICLFFNR RYELKILEEE PNKNYFSPWC VIPMIFNAIL ELIRSFTIAY 420
  421 RNGPHYREGW FLFFFRMVGL LIPGLPAHGP QDYINSTLLG SIERHFKED

Type	Start	End	Confidence
Cytoplasmic	1	56	0.92
Transmembrane Helix	57	78	0.82
Non-Cytoplasmic	79	84	0.67
Transmembrane Helix	85	106	0.88
Cytoplasmic	107	284	0.88
Transmembrane Helix	285	305	0.80
Non-Cytoplasmic	306	394	0.83
Transmembrane Helix	395	418	0.64
Cytoplasmic	419	428	0.77
Transmembrane Helix	429	449	0.78
Non-Cytoplasmic	450	469	0.90