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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|92893999
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPYNTFFYY YNNKNPMESK FQLFFLTLFL LILNIHAQTL GTYIVQLHPH GTTKSLFTSN  60
   61 LEWHLSFIQQ TISSDEDPSS RLLYSYRSAM DGFAAQLTEY ELEYLQKNPD VISIRPDRLL 120
  121 QIQTTYSYKF LGLNPAKQNG WYQSGFGRGT IIGVLDTGVW PESPSFNDHD MPPVPKKWKG 180
  181 ICQTGQAFNS SNCNRKLIGA RYFTKGHLAI SPSRIPEYLS PRDSSGHGTH TSSTAGGVPV 240
  241 PMASVFGYAN GVARGMAPGA HIAVYKVCWF NGCYNSDIMA AMDVAIRDGV DVLSLSLGGF 300
  301 PVPLYDDSIA IGSFRAMEKG ISVICAAGNN GPMAMSVAND APWIATIGAS TLDRKFPAIV 360
  361 RMGNGQVLYG ESMYPVNRIA SNSKELELVY LSGGDSESQF CLKGSLPKDK VQGKMVVCDR 420
  421 GVNGRSEKGQ AVKEAGGAAM ILANTELNLE EDSVDVHLLP ATLVGFDESV TLKTYINSTT 480
  481 RPLARIEFGG TVTGKSRAPA VAVFSARGPS FTNPSILKPD VIAPGVNIIA AWPQNLGPTG 540
  541 LPDDTRRVNF SVMSGTSMSC PHVSGIAALI HSAHKKWSPA AIKSAIMTTA DVTDHTGRPI 600
  601 LDGDKPATAF ATGAGNVNPQ RALNPGLIYD IKPDDYVNHL CSIGYTKSEI FSITHKNISC 660
  661 HTIMRMNRGF SLNYPSISVI FKDGIRRKMF SRRVTNVGNP NSIYSVEVVA PQGVKVIVKP 720
  721 KKLIFKKINQ SLSYRVYFIS RKRVKKGSDT MNFAEGHLTW INSQNGSYRV RSPIAVSWNS 780
  781 K

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle