YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92893907
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.96
Transmembrane Helix	69	90	0.91
Non-Cytoplasmic	91	118	0.87
Transmembrane Helix	119	143	0.84
Cytoplasmic	144	163	0.76
Transmembrane Helix	164	186	0.86
Non-Cytoplasmic	187	192	0.72
Transmembrane Helix	193	210	0.84
Cytoplasmic	211	230	0.86
Transmembrane Helix	231	254	0.85
Non-Cytoplasmic	255	264	0.80
Transmembrane Helix	265	285	0.88
Cytoplasmic	286	294	0.68
Transmembrane Helix	295	311	0.59
Non-Cytoplasmic	312	319	0.56
Transmembrane Helix	320	341	0.91
Cytoplasmic	342	356	0.68
Transmembrane Helix	357	377	0.90
Non-Cytoplasmic	378	443	0.66
Transmembrane Helix	444	477	0.76
Cytoplasmic	478	478	0.31
Transmembrane Helix	479	513	0.68
Non-Cytoplasmic	514	514	0.35
Transmembrane Helix	515	542	0.67
Cytoplasmic	543	761	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLTEERIE IRDDHKQPLL IRSRINNSSQ LAIVGANICP IQSLDYELIE NDLLKQDWRS  60
   61 RTKVEIYQYV VLKWTLALLI GLITGLVGFF NNLGVENIAG FKLLLTNNLM LKQKYHEAFA 120
  121 VYVGCNMILG VGAAALCAYI APAAAGSGIP EVKAYLNGID AHSILAPSTL FVKIFGSILG 180
  181 VAAGFIVGKE GPMVHTGACI ANLLGQGGSR KYRLTWKWLR YFKNDRDRRD LITCGAAAGV 240
  241 AAAFRAPVGG VLFALEEAAS WWRSALLWRT FFTTAVVAVV LRSLMQFCHQ GGGRCGLFGE 300
  301 GGLIMFDVNS AKPAYTTPDL LAVIFLGVIG GLMGSFYNYL VDKVLRTYGA INERGPIFKI 360
  361 LLVMIISFVT SCIRFGLPLL SKCVPCPGEC PSSPTGGFSI HYDNFQCPPN HYNDLSSLFF 420
  421 TTNDDAIRSL FNDGSASANT GFQLSSLIIF FVAIYLLGIV TYGVAIPSGL FIPVILAGAS 480
  481 YGRLIGTVMA PFTALDTGLF ALLGAASFLG GTMRMTVSLC VILLELTNNL LMLPLVMLVL 540
  541 LISKTVADCF NKGVYDQIVA LKGLPYMEAH AEPYMRNLVA GDVVSGPLFS FCGIEKVGNI 600
  601 LHALKVTEHH GFPVVDEPPL TDAPELCGLV LRSHLWVLLK HKTLFTRERV MTGSTIVNKV 660
  661 KARDFAKPGL GRGIRVEDLD ISQEEMEMYV DLHPITNTSP YTVVETMSLA KAALLFRELG 720
  721 LRHLLVVPKK PGRPPIVGIL TRHDFMHDYI LGLFPNLNPH K