YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92892758
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	178	0.93
Transmembrane Helix	179	197	0.91
Non-Cytoplasmic	198	214	0.75
Transmembrane Helix	215	238	0.80
Cytoplasmic	239	245	0.76
Transmembrane Helix	246	266	0.92
Non-Cytoplasmic	267	272	0.76
Transmembrane Helix	273	295	0.84
Cytoplasmic	296	307	0.87
Transmembrane Helix	308	330	0.90
Non-Cytoplasmic	331	335	0.79
Transmembrane Helix	336	354	0.92
Cytoplasmic	355	398	0.93
Transmembrane Helix	399	420	0.89
Non-Cytoplasmic	421	436	0.84
Transmembrane Helix	437	457	0.88
Cytoplasmic	458	472	0.70
Transmembrane Helix	473	489	0.75
Non-Cytoplasmic	490	527	0.57
Transmembrane Helix	528	554	0.82
Cytoplasmic	555	561	0.55
Transmembrane Helix	562	581	0.87
Non-Cytoplasmic	582	588	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSGLISNR NFGSFIASGN SYRSQKDISH QRVGISVSGV TVTRCGGCVA KGSLSRCPNA  60
   61 TRSHIDSPLE ERVSKQIQTF DNKRELFSPL SRQCSRGLNI KLKACKISHC YLSSSTFSSS 120
  121 NVEQRKANKF QVRYKAEEYE FAEPNIDGLQ PTDGTGEAIL LEGNLLQTSP WWQQFPKRWV 180
  181 IVLLCFTAFL LCNMDRVNMS IAILPMSQQF NWNSATVGLI QSSFFWGYLL TQIAGGIWAD 240
  241 KVGGKLVLGF GVVWWSIATV LTPIAAKLGL PYLLVMRAFM GIGEGVAMPA MNNILSKWIP 300
  301 VSERSRSLAL VYSGMYLGSV TGLGFSPFLI QKFGWPSVFY SFGSLGSIWF ALWLRNAYST 360
  361 PKDDPNLGDE EKRLILGGNV SKEPVTVIPW KLILSKAPVW ALIVSHFCHN WGTFILLTWM 420
  421 PTYYNQVLKF NLTESGLLCV LPWLTMAVFA NIGGWIADTL VSKGFSITTV RKIMQSIGFL 480
  481 GPAFFLTQLS NVRTPAMAVL CMACSQGCDA FSQSGLYSNH QDIGPRYAGV LLGLSNTAGV 540
  541 LAGVFGTAAT GYILQRGSWN DVFKVSVVLY LIGTLVWNIF STGEKILD