YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92892142
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTASKIKSV DFYRKIPRDL TEASLSGAGL SIVAALAMMF LFGMELNEYL SVHTSTSVII  60
   61 DKSSDGEFLR IDFNLSFHAL SCEFASVDVS DVLGTNRMNL TKTVRKFSID SNLRPTGSEF 120
  121 YLRPSTNVIK HDDKVDDESL EGAFVFTSNN FDKYSHQFPI TAVNFYAPWC YWSQRLRPSW 180
  181 EKTAKIIRER YDPEMDGRIL LGKVDCTKEA DLCRRHHIQG YPSIRIFRKG SDVRSDHGHH 240
  241 EHESYYGDRD TDSLVKTMEN ILASFPSEYY KLALEDKLNV TEDSKRPAPS SGGCRIEGYV 300
  301 RVKKVPGNLI ISARSDAHSF DASQMNMSHA VHHLSFGKKL SPKLMSDVQR LIPYVGNSHD 360
  361 RLDGLSFINS HDFGANVTLE HYLQIVKTEV ITRQGYQLVE EYEYTAHSSL AHSLHVPVAR 420
  421 FHLQLSPMQV LITEDHKSFS HFITNVCAIV GGVFTVAGIT ESILHNTIRL MRKVELGKNF 480
  481

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	44	0.87
Non-Cytoplasmic	45	441	0.98
Transmembrane Helix	442	464	0.72
Cytoplasmic	465	480	0.73