YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92892961
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNPQPSAS NPPPKPWERA GSSSGPAPFR PPSGGSTSDV VEASGTAKPG EIVTAADRSA  60
   61 AVNRNTLARP VPTRPWEQNY GTNSYGGGAL GGYGSTMNHN SGYGSGMYGS SYGGGLGGGL 120
  121 GGGIYGGGGM YGYSMYRGGY GSGLYGSSGM YGGGGMYNSG LGGPMGGMGG YGMGVGPYGG 180
  181 EQDPNNPYGA PPSPPGFWIS VMRVMQGVVN FFGRISILID QNTQAFHLFM TAMLQLFDRS 240
  241 GMLYGELARF VLRLLGIKTK ANKVNPPGPN GYPHQGPNGY PHQGQHNSSG NMNYIEAPKA 300
  301 APSGSWDNVW GNDTSQ

Type	Start	End	Confidence
Cytoplasmic	1	80	0.83
Transmembrane Helix	81	97	0.46
Non-Cytoplasmic	98	111	0.52
Transmembrane Helix	112	133	0.84
Cytoplasmic	134	143	0.50
Transmembrane Helix	144	173	0.62
Non-Cytoplasmic	174	195	0.64
Transmembrane Helix	196	218	0.62
Cytoplasmic	219	316	0.77