YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92891891
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.37
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTLCLLQSG IPGIVPLITS ISATTTTSRA NDHVHVHQSH VTTVRRSNKS SMFSRFIGSS  60
   61 ARNNCLAAVN DAFTAENADR TVKEGDGQNG NWVFKVFDLN SVWKGEQESG DNDGDECDVC 120
  121 RVDEEVDDEN EDEEIRFDRE SFSRMLRRVT LVEARMYAHM SHLGNLAYSI PNIKKKELAA 180
  181 SIKKEETNGK DAGERKVEKN GELKTSASNA CEIAVVEGSV EGSNGSVDTV NMMDTDVGCL 240
  241 MATTNSMTAV VAANEEVKQS FADDLNSTSS SPCEWFICDD DRSSTRYFVI QGSESFESWQ 300
  301 ANLLFEPVQF EGLDVLVHRG IYEAAKGTYQ QMLPEVHAHL KSQGSRATFR FTGHSLGGSL 360
  361 ALLINLMLLI RKEVPISSLL PVITFGSPSI MCGGDRLLEK LGLPRSHVQG ITMHRDIVPR 420
  421 AFSCTYPNHV AELLKAVNAS FRSHPCLNNQ KLLYAPMGEL MILQPDEFFS PSHHLLPPGS 480
  481 GLYLLSGPLS ESNDTENQLK AAKLVFLNSP HPLEILSDRS AYGPGGAIHR DHDMNSYLKS 540
  541 VRTVIRQELS QIRTAARREL RRKVRWPLVA RRVSDADIVG GRSMVSVHII QDQPPFSGIK 600
  601 QTGRKSLKRF CRLVASQHMQ LFVVFLLPTL GNI

Type	Start	End	Confidence
Signal Peptide	1	23	0.56
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	350	0.86
Transmembrane Helix	351	370	0.63
Cytoplasmic	371	609	0.52
Transmembrane Helix	610	629	0.38
Non-Cytoplasmic	630	633	0.72