YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92867858, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNSYQNDKT TPLCFFFIFI FFSGVPFAGA QTNDNTNDNS YYNRVSPSMA IIIVILVAAL  60
   61 FLMGFFSIYI RRCGDSPSNS IRNMAGGLAG RSRRAARGLD ASVIATFPIF EYSTVKIHKI 120
  121 GKGALECAVC LNEFEESETL RLIPKCDHVF HPECIDEWLG SHTTCPVCRA NLVPQPGESV 180
  181 HGIPSINTEP QDIEAQNDAV ESVHEHQNAD GSVKVDPTEP EVLTVSQTLN RNRTRGSQSG 240
  241 RPRWFQRSHS TGHSLVQPGE NTERFTLRLP VEVRKQILQN PELHRARSLV VLPRETSSRR 300
  301 GYRTGGGEGS SRGKSVRRLD RGLLSDRWVF TMAPPFLVRA SSMRSPRVAS SAGEGTSASA 360
  361 ATAAVVESPR PPV

Type	Start	End	Confidence
Cytoplasmic	1	10	0.91
Transmembrane Helix	11	30	0.94
Non-Cytoplasmic	31	48	0.86
Transmembrane Helix	49	70	0.94
Cytoplasmic	71	373	0.86