YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92889602
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLFRLADH QDFLSRRCIW VNGPVIIGAG PSGLATAACL REQGVPFVVL ERADCIASLW  60
   61 QKRTYDRLKL HLPKQFCQLP NLPMPEDFPE YPSKKQFISY LENYANKFEI NPQFNECVQS 120
  121 AKYDETSGLW RVKTNEVEYI CRWLVVATGE NAECVTPEIE GLSEFKGEVV YACDYKSGKN 180
  181 FEGKKVLVVG CGNSGMELSL DLSNHHALPS MVVRSSVHVL PREIFGISTF ELAVMMLKWL 240
  241 PLWIVDKLLL ILTWFILGDM EKYGIKRPSM GPLQLKNTVG KTPVLDIGAL EKIRSGDINV 300
  301 VPGIKRINKN GEVELVNGEK LDIDAVVLAT GYRSNVPSWL QEGEFFSKNG YPKMPFPHGW 360
  361 KGNSGLYAVG FTKRGLSGAS SDAVKIAQDI GKVWKQETKQ KKQRTTACHR RCISQF

Type	Start	End	Confidence
Cytoplasmic	1	17	0.66
Transmembrane Helix	18	38	0.60
Non-Cytoplasmic	39	416	0.89