YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92889086
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGKKTSKTK SLLSFRRRSN KLPSPPPRSP PPTLEITGSP SENRLVPKPK KKTGGARLWM  60
   61 RFDRFGKSEL VEWEKNTIIR HAAIPARDLR ILGPVFSHSS NILAREKAMV VNLEFIKAIV 120
  121 TAEEILLLDP LRQEVLPFVE QLRQQLPHKT QPKLLGGAGG GDESVPEGAE ELPLPFEFQV 180
  181 LEIALEVVCT YLDKNVAELE KGAYPVLDAL AKNVSTKNLE HVRSLKSNLT RLLARVQKVR 240
  241 DEIEHLLDDN EDMAQLYLTR KWLQNQQLDA HLGATASNNL LNTSHSVRRI NSTRSGSLVT 300
  301 SSDDNDVEDL EMMLEAYFMQ LDGTRNKILS VREYIDDTED YVNIQLDNHR NELIQLQLTL 360
  361 TIASFAIAFE TLVAGAFGMN IPCTLYTQNG IFWPIVGGMT AVSILLFLVV LAYAKWKKLL 420
  421 GS

Type	Start	End	Confidence
Cytoplasmic	1	357	0.80
Transmembrane Helix	358	379	0.87
Non-Cytoplasmic	380	390	0.70
Transmembrane Helix	391	414	0.91
Cytoplasmic	415	422	0.79