YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92879245, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACTSANSLL QLKGSSFQRP ILNLRTNISA PYSPGLFNLK GDGLIHKGFR HQSQKHLTPR  60
   61 NKVTVIRAVA IPVEPAPVES AEYRKQLAER YGFEQIGEPL PDNVTLKDVI TSLPKKVFEI 120
  121 DDVKAWKSVL ISATSYALGL LMISKAPWYL LPLAWAWTGT AVTGFFVIGH DCAHKSFSTN 180
  181 KLVEDIVGTL AFLPLIYPYE PWRFKHDKHH AKTNMLKEDT AWQPVWQDEF ESSPFLRKAI 240
  241 IYGYGPFRCW MSIAHWLVSH FDLKTFRPNE IKRVKISLAC VFAFIAIGWP LIIYKTGIMG 300
  301 WIKFWLMPWL GYHFWMSTFT MVHHTAPHIP FKNSEEWNAA QAQLNGTVHC AYPQWIEILC 360
  361 HDINVHIPHH ISPKIPSYNL RAAHKSIQEN WGKYLNEASW NWRLMKTIMT VCHVYDKQQN 420
  421 YVSFDEVAPK ESRPIRFLKK VMPDYA

Type	Start	End	Confidence
Cytoplasmic	1	124	0.95
Transmembrane Helix	125	144	0.73
Non-Cytoplasmic	145	152	0.54
Transmembrane Helix	153	172	0.84
Cytoplasmic	173	273	0.63
Transmembrane Helix	274	293	0.93
Non-Cytoplasmic	294	304	0.67
Transmembrane Helix	305	326	0.80
Cytoplasmic	327	446	0.92