YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92886590
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.99
Transmembrane Helix	45	65	0.92
Non-Cytoplasmic	66	72	0.74
Transmembrane Helix	73	93	0.92
Cytoplasmic	94	112	0.93
Transmembrane Helix	113	135	0.88
Non-Cytoplasmic	136	160	0.94
Transmembrane Helix	161	183	0.91
Cytoplasmic	184	222	0.96
Transmembrane Helix	223	242	0.91
Non-Cytoplasmic	243	277	0.86
Transmembrane Helix	278	302	0.87
Cytoplasmic	303	321	0.95
Transmembrane Helix	322	343	0.83
Non-Cytoplasmic	344	391	0.87
Transmembrane Helix	392	411	0.95
Cytoplasmic	412	418	0.72
Transmembrane Helix	419	442	0.89
Non-Cytoplasmic	443	456	0.83
Transmembrane Helix	457	479	0.75
Cytoplasmic	480	506	0.82
Transmembrane Helix	507	529	0.87
Non-Cytoplasmic	530	561	0.88
Transmembrane Helix	562	584	0.86
Cytoplasmic	585	601	0.70
Transmembrane Helix	602	626	0.81
Non-Cytoplasmic	627	635	0.76
Transmembrane Helix	636	661	0.81
Cytoplasmic	662	676	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPMGNISNE EQELREIENL EREDVEKVGI DVEDGSGIAP WTKQFTIRGL ITSILIGIVY  60
   61 SVIVLKLNLT TGLVPNLNVS VALLGFVFIK LWTKILEKAN IVSTPFTRQE NTIIQTCAVA 120
  121 CYSPSFGGGF GSYLLGLNRA TYERVGGAST PGNTPDTKET GIGWMTGFLF VTYFVGLTAL 180
  181 IPFRKMMIID SKLPYPSGTA TGVLINGFHT PKGNVMAKKQ VKGFTRFFSF SLLWSFFQWF 240
  241 YAGDGQCGFA QFPTFGLKAW KNTFYFDFSM TYVGAGMICS HLVNLSLLFG AVVSWGILWP 300
  301 LIRVLKGNWF PETLPESSMK SLNGYKVFIS ISLILGDGLY NFIKIIYFSA LNFQACMKKR 360
  361 DHKADSFKDN SQNRTLDDLT RDEFFVKESI PIWLAFVGYL GLTIISITVI PHIFPQVKWY 420
  421 FVVVAYLLAP ILGFCNAYGA GLTDMNMSYN YGKVALFILA ALGGKSDGVV AGLVACGLIK 480
  481 SLASTSADLM QDFKTSYLTL TSPRSMLVSQ TIGTAIGCVV APLTASIFYH TYDVGNPDGE 540
  541 YKSPYAIIYR NMAILGVEGF SALPSHCLQF CYGFFAFALL ANLLRDWNPK NIGKWVPLPM 600
  601 AMAVPFVVGA YFAIDMCVGS LVVFVWSWMK KEEAGLMIPA VASGLICGDG IWVLPSSLLA 660
  661 WFKIHPPICM NFLANK