YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92885190
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.61
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVIRISSTM FRTEFLLCTF CMMIVLAHCQ QQGGQGAQTV PGVGVNWGLL ATNPIDPNIV  60
   61 VNMIKDNGIK MVKIFDTDPW ILGAFSGTDI EVMVGIPNDQ LKKLSKSMDE AEDWVKHNVS 120
  121 KHMHDGGVNI RYVSVGNEAF LKSYNGSYVG TTFPAMENVQ KAINKAGFGD KIKVTTALNA 180
  181 DVYDTNSEKP SGGNFRADIF DVMKQIVKFL DENNSPFLVN IYPFLSLYQN DDFPEDYAFF 240
  241 DSSSRTISDN DIHYSNVFDA NFDTLVWSLK KAGHPKVSIM IGEVGWPTDG NRHANPNTAK 300
  301 RFYQGFLKKM ANKKGSPLRP GPMKVYLFSL VDENLKSVAP GDFERHWGIF RYDGKPKFPI 360
  361 DFSGKGQDKL PIGAKGVRYL DHKWCVLSKE VKNLSSVYGP LGYACAVGDC TSLCIGCSCG 420
  421 NLDVRGNTSY AYNQYFQMNE QSVEACSFDG TATIVTQDPS NGTCLFPIEI YSGGTMLQGG 480
  481 IHTVRILLIG LVMIFLTFI

Type	Start	End	Confidence
Signal Peptide	1	29	0.96
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	478	0.99
Transmembrane Helix	479	498	0.58
Cytoplasmic	499	499	0.61