YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92884276
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQHQPLTTH EAPKISHQTE TGLNKEISDS GANGRRPDIS LQVPPRPLGF GSTAGGKVLD  60
   61 HSQSFSKGWS SPKGFLRVLS FKRKVNVAAD GERSSLLNSD PKTAAESTSM TSISEIPWSR 120
  121 CNSLPVSHAP NLSPSVAATP VSARTYNEQQ IKPHKDVKSK VSRSLSIPGR NVVIVRSVSF 180
  181 NTRSEQDKED TNDDQITPAP VEVTEDEEIP EEAAVCRICL DECDEGNTFK MECYCKGDLR 240
  241 LVHEECLIKW LNTKGTNKCE ICGKVVQNLP VTLLRVSSSV QRRNRPLQDH QNFNSETISA 300
  301 WQDFVVLVLI STICYFFFLE QLLLPDLKTQ AIIMSAPFSF TLGLLGSVFA IVLAIKEYIW 360
  361 TYAALEFALV AITVHLFYTM LHLAPIYSIL LSTVFGFGIA MGINYIYIQY VNWRLQVSIN 420
  421 ENPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	299	0.80
Transmembrane Helix	300	319	0.93
Cytoplasmic	320	330	0.69
Transmembrane Helix	331	353	0.91
Non-Cytoplasmic	354	358	0.62
Transmembrane Helix	359	379	0.88
Cytoplasmic	380	385	0.61
Transmembrane Helix	386	408	0.91
Non-Cytoplasmic	409	424	0.71