YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92884197
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSASRKPH AVLIPYPLQG HINPMFRLAK LLHLRGFHIT FVNTEYNHKR LLKSRGPNAF  60
   61 DGFTDFRFET IPDGLTPMDG DGGDATQDLI SLRESIRKNC IEPFRELLAK LNDSAKAGLI 120
  121 PFVTCLVSDC IMPFTTQVAE ELALPIVIFF PSSACSFLSI LHFRALIEKG LIPLKDESYL 180
  181 TNGYLDTKVD WIPGLRNFRL KDLPDFIRTT DANDLMLEFI FEMVDRLHRA SAIFLNTSND 240
  241 LESDVMNALY SMLPSLYTIG PFASFLNQSP QNHLESLGSN LWKEDTKCLE WLESKESGSV 300
  301 VYVNFGSITI MSPEKLLEFA WGLANSKKTF LWIIRPDLVI GGSVVLSSEF VNEIADRGLI 360
  361 ASWCPQEKVL NHPSIGGFLT HCGWNSTTES ICAGVPMLCW QFFGDQPTNC RFICNEWEIG 420
  421 IEIDMNVKRE EVEKLVNELM VGEKGNKMRK KVMELKKKAD EDTRLGGSSY LNLDKVIKEV 480
  481 LLKQN

Type	Start	End	Confidence
Cytoplasmic	1	116	0.59
Transmembrane Helix	117	135	0.49
Non-Cytoplasmic	136	142	0.77
Transmembrane Helix	143	165	0.60
Cytoplasmic	166	247	0.58
Transmembrane Helix	248	263	0.22
Non-Cytoplasmic	264	485	0.65