YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92881064
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKRVYQVW KGSNKFILGG RLVFGPDARS LLITLSLIIV PVIIFCVFVA RHLRHAFSSY  60
   61 YSGYAILVVA ILFTIHVLVL LCFTSARDPG IIPRNSHPPE EEFRYESSTV AGQQTPSLQF 120
  121 PRTKEVMVNG LPVKVKYCET CMLYRPPRCS HCSICNNCVE RFDHHCPWVG QCIGLRNYRY 180
  181 FFMFVSSATI LCIYVFSFSA FYIKVLMDNN DIGTVWKAIK ESPASVILMA YCFISLWFVG 240
  241 GLTGFHLYLI GTNQTTYENF RYRADGRINV FNRGCLNNFL EVFCTEIKPS RNNFRAFVQE 300
  301 EVQRPLTTVI SRGREPDDLG GDRRPKVEDD LDIGEDLLKI SQRRNIEQLD EDIQNRGSNG 360
  361 APHNTAEPDS ILSSDHRATT IRSDARHSSW ERSGNWEIAQ DVFANSNVTE SRNYVSSKET 420
  421 RQ

Type	Start	End	Confidence
Cytoplasmic	1	30	0.86
Transmembrane Helix	31	53	0.92
Non-Cytoplasmic	54	60	0.80
Transmembrane Helix	61	84	0.90
Cytoplasmic	85	179	0.88
Transmembrane Helix	180	203	0.89
Non-Cytoplasmic	204	226	0.79
Transmembrane Helix	227	250	0.87
Cytoplasmic	251	422	0.87