YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92880891
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTSNHLIGV LNFLTFLLSI PILGGGIWLS SRANNTDCLK FLQWPLIIIG VSIMVVSLAG  60
   61 FAGACYRNTF LLRFYLVVMF FVIGVLIGFI IFAYVVTDKG SGRRVMNRGY LDYYLEDYSG 120
  121 WLEERVASDE YWGKISSCIR DSKACRKLAR NFNDVPETAD MFFERKLNPI QSGCCKPPTD 180
  181 CGYLYQNETV WIQGAGLVGT NPDCNKWNND QQQLCYDCDS CKAGVLGSLK KSWRKVSVIN 240
  241 IVVMIILVIV YIVAYYAYRN NKKMDNDEPY GEARMTKSQP SAFHL

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.83
Transmembrane Helix	8	30	0.92
Cytoplasmic	31	40	0.85
Transmembrane Helix	41	64	0.90
Non-Cytoplasmic	65	73	0.72
Transmembrane Helix	74	96	0.95
Cytoplasmic	97	235	0.91
Transmembrane Helix	236	258	0.90
Non-Cytoplasmic	259	285	0.91