YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92878845
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLKQMSHA DNSAPSTPGK FKMEKASYFN RVRWHASPAK LCLWSFVFSA AILIFFFRSP  60
   61 ASSPLPADPS RRSLRSPSNW GGPVWEKRVR SSARVRSRNG FSVLVTGAAG FVGTHVSAAL 120
  121 KRRGDGVLGI DNFNDYYDPS LKRARQALLE RTGVFIVEGD INDAALLRKL FEVVPFTHVM 180
  181 HLAAQAGVRY AMENPGSYVH SNIAGFVNLL EVCKSVNPQP SIVWASSSSV YGLNTKVPFS 240
  241 ERDRTDQPAS LYAATKKAGE EIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTRDI 300
  301 LKGKTIPIFE AANHGTVARD FTYIDDIVRG CLGALDTAEK STGSGGKKRG PAQLRVFNLG 360
  361 NTSPVPVSDL VGILERLLKT KAKRNIMKLP RNGDVQFTHA NISYAQRELG YKPVTDLQAG 420
  421 LKKFVRWYLN YYSSGKKAVE

Type	Start	End	Confidence
Cytoplasmic	1	40	0.84
Transmembrane Helix	41	57	0.95
Non-Cytoplasmic	58	440	0.90