YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92878610
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLGNPKAW VPYMNSKDCS QGFCSVYCPQ WCYAIYPPPS PSPFEFPDED SSPNFSPLVI  60
   61 AIIGILASAF LLVTYYTIIS KYCGRRESSA SESREANDEF EDDHHHHHNP SIHEPWHVST 120
  121 NGLDETLIKS ITVCKYKKND GLVDVTDCSV CLNEFQDDES IRLLPKCSHA FHLPCIDTWL 180
  181 KSHSNCPLCR ATIFAFNSSN SSAATLHLPA PVIENPSTNE VSLETQHPNE VLDVERDNEL 240
  241 DVVEEVPIPK TEFRALSDLG NLRGRHSVIE IRDHNEDYHE SIRRSFSMDH SFQSGVLNVD 300
  301 DVNVMHMNQE QDCSQGEGSS KRLRGESESS KCSYRRKVLH CVLSPIAMKR SFSSGRFFLS 360
  361 RSGRGRLGVL PL

Type	Start	End	Confidence
Non-Cytoplasmic	1	57	0.53
Transmembrane Helix	58	79	0.91
Cytoplasmic	80	372	0.66