YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92872511, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.48
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGVFQQLL RRKLQSHSLS PSVSSIVSKK DGSGSTGSSS LRALALIGAG VSGLLGFATT  60
   61 ASADEAEHGL ASPHYPWPHE GILSSYDHAS IRRGHQVYTQ VCASCHSMSL ISYRDLVGVA 120
  121 YTEEEVKAMA AEIEVEDGPN DEGEMFTRPG KLSDRFPQPY ANESAARFAN GGAYPPDLSL 180
  181 ITKARHNGQN YVFALLTGYR DPPAGVSIRE GLHYNPYFPG GAIAMPKMLN DGAVEYEDGT 240
  241 PATEAQMGKD VVSFLSWAAE PEMEERKLMG FKWIFVLSLA LLQAAYYRRL RWSVLKSRKL 300
  301 VLDVVN

Type	Start	End	Confidence
Signal Peptide	1	63	0.68
N-region	1	54
H-region	55	60
C-region	61	63
Cleavage Site	63	64
Non-Cytoplasmic	64	268	0.91
Transmembrane Helix	269	290	0.66
Cytoplasmic	291	306	0.65