YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92872427, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.91
Transmembrane Helix	14	34	0.86
Non-Cytoplasmic	35	44	0.77
Transmembrane Helix	45	64	0.92
Cytoplasmic	65	71	0.94
Transmembrane Helix	72	90	0.91
Non-Cytoplasmic	91	102	0.70
Transmembrane Helix	103	125	0.89
Cytoplasmic	126	138	0.87
Transmembrane Helix	139	157	0.94
Non-Cytoplasmic	158	188	0.93
Transmembrane Helix	189	209	0.94
Cytoplasmic	210	221	0.81
Transmembrane Helix	222	243	0.92
Non-Cytoplasmic	244	255	0.85
Transmembrane Helix	256	275	0.92
Cytoplasmic	276	285	0.76
Transmembrane Helix	286	306	0.94
Non-Cytoplasmic	307	310	0.79
Transmembrane Helix	311	331	0.92
Cytoplasmic	332	395	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMEKSNSFE NMKHYTAMIC LQFGYAGMNI ITKVSLNQGM SHYVLVVYRH AFATASIAPF  60
   61 AFMFERKGQP KITFRIFLQI FVLALLGPVI DQNFYYAGLK LTSPTFSCAM SNVLPAMTFV 120
  121 MAVLCRMEKI NIKQVRCQAK ILGTILTVAG AMLMTLYKGP IVEMVWAKNR HPQNETHETS 180
  181 TTGSSERDWI LGCTFLIIAT FAWASLFVLQ AKVIETYKHH QLSLTSLVVF IGTLQAIAVT 240
  241 FVAEHDPSVW RIGWDMSLLA SAYAGIVTSS LAYYVQGLVI RKKGPVFATA FSPLMMIIVA 300
  301 IMGSFILAEQ IYSGGVMGAI LIVIGLYSVL WGKHKEEIER KVDDIPLPIK GPQMSGNSGL 360
  361 VIDDTDQVKH GQVEDTNNML SSVAISIPTN NVNQQ