YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92872155
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDMTSSKDG QSPPNSKKTS KKPKYSKFSQ QELPAWKPIL TPGWVIATFT AIGIIFIPIG  60
   61 LASLFSSGKV VEAEFRYDET CLSPDVAKDA VAYIKSDTTN KTCTHKWIVE QKMQAPVFIY 120
  121 YQLENYYQNH RRYVKSRNDK QLWRKSAELQ TDHCDPVDKT EGKEPIVPCG LIAWSMFNDT 180
  181 YKFSIDNKDL TINKKNIAWG SDKNSKFGHE VYPKNFQSGG LIGGAKLNES VPLSEQEDLI 240
  241 VWMRTAALPT FRKLYGKIES DLEVNDEIEI LIQNNYNTYE FQGRKKLVLS TTTWIGGKNR 300
  301 FLGVAYLCVG GLSLFCAIGF ILLYVVKPRP LGDPSYLSWN RNPGILK

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.73
Transmembrane Helix	43	66	0.86
Cytoplasmic	67	301	0.75
Transmembrane Helix	302	326	0.90
Non-Cytoplasmic	327	347	0.75