YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92871740, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSYCVKEN KECVKWVETY FKDCLCNLRD DISFSLGLMS LVSWGVAEIP QIITIFRNKS  60
   61 SHGISLAFLL TWVAGDICNL VGCLLEPATL YASTTIILLL QIVYYDHILR WCKHRQNVKS 120
  121 KLDNEEEKRP LNPKPSQVYS GIAIPNGTQK EAARGEYYYM SARSLAGSAT PPSFTHLRAA 180
  181 KSGPSALEFI HDSSDDDEAS QVTSNISTTK PWSIPRSVDG RYGTFLATAI NLPLKGNSMR 240
  241 YGYIGFTGIK LLKENEVHST YGQYLGWIMA AIYTCSRIPQ IWLNIKRGSV EGLNPFMFVF 300
  301 ALIANTSYVG SILVRTTEFE SIKANLPWLL DATVCVALDF FIISQYIYYR YFRSSESSDD 360
  361 GEYLK

Type	Start	End	Confidence
Cytoplasmic	1	61	0.74
Transmembrane Helix	62	83	0.76
Non-Cytoplasmic	84	87	0.69
Transmembrane Helix	88	109	0.74
Cytoplasmic	110	291	0.80
Transmembrane Helix	292	314	0.83
Non-Cytoplasmic	315	326	0.46
Transmembrane Helix	327	349	0.84
Cytoplasmic	350	365	0.52