YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92868505, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGNSSKMMS DANDCTKMGT HSVYAADLSS YEAACVKDPN LQSFDESIKE HTNRVISSLA  60
   61 TGVEVRSLSF NSLREVTDSL LEMNHEVVKV ILDCKRDIWG NKDLFALVND YFDNSLQTLE 120
  121 FCNSLEKCLR RARENQVMVK SVITYFEEEV QNGLEGGTCV KTLQELRNFK DAGDPFTEEF 180
  181 YLLFQSVYTQ QATMLKKLQI RKRKLDKKLK SLKSWKRVSN AIFLAAFVSV LIFSVVAASI 240
  241 AAPPVVTALA AALVVPLGSV GKWCNSLFKG YEKAIKGQRE VVSSMQLGTY ISLKDLDNIR 300
  301 VLTNKLELQL ESLLQNADFA LKNEDVIKLA IDEIKKNIET FSETLETLSA NADKCSRQIR 360
  361 KARTVVIQNI IKRPD

Type	Start	End	Confidence
Cytoplasmic	1	217	0.98
Transmembrane Helix	218	241	0.88
Non-Cytoplasmic	242	245	0.75
Transmembrane Helix	246	266	0.87
Cytoplasmic	267	375	0.95