YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92870446
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.91
Transmembrane Helix	31	52	0.90
Cytoplasmic	53	61	0.78
Transmembrane Helix	62	78	0.90
Non-Cytoplasmic	79	92	0.82
Transmembrane Helix	93	113	0.88
Cytoplasmic	114	126	0.78
Transmembrane Helix	127	149	0.88
Non-Cytoplasmic	150	160	0.85
Transmembrane Helix	161	182	0.92
Cytoplasmic	183	195	0.86
Transmembrane Helix	196	217	0.88
Non-Cytoplasmic	218	226	0.78
Transmembrane Helix	227	249	0.92
Cytoplasmic	250	264	0.91
Transmembrane Helix	265	290	0.85
Non-Cytoplasmic	291	343	0.68
Transmembrane Helix	344	369	0.82
Cytoplasmic	370	376	0.56
Transmembrane Helix	377	396	0.48
Non-Cytoplasmic	397	406	0.50
Transmembrane Helix	407	430	0.89
Cytoplasmic	431	803	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSNTTSGNV CPPPMQPASN GVFQGDHPLD YALPLAILQI CLVLVVTRGL AYLLNPLRQP  60
   61 RVIAEIVGGI LLGPSALGRN KGYLHAVFPP KSLPVLDTLA NLGLIFFLFL AGIELDPKSL 120
  121 RKTGGRVLAI AIAGISLPFA LGIGSSFVLQ RTIAKGVNTS AFLVYMGVAL SITAFPVLAR 180
  181 ILAELKLLTT SVGRMAMSAA AVNDVAAWIL LALAVALSGN SQSPFVSLWV FLSGCGFVVC 240
  241 SILIVLPIFK WMAQQCHEGE PVDELYICAT LAAVLAAGFV TDAIGIHAMF GAFVFGILVP 300
  301 KDGAFAGALV EKIEDLVSGL LLPLYFVSSG LKTDIATIQG LQSWGLLVFV TFTACFGKIV 360
  361 GTIVVSLICK VPFNESLVLG FLMNSKGLVE LIVLNIGKDR KVLNDQTFAI MVLMALITTF 420
  421 MTTPFVLAAY KRKERKSNYK YRTIERKNAD GQLRILACFH GSRNIPSLIN LIEASRGIKK 480
  481 HDALCVYAMH LKEFCERSSS ILMAQKVRQN GLPFWDKGRH GDSLHVIVAF EAYQKLSQVF 540
  541 VRPMIAISSM ANIHEDICTT ADRKRAAVII LPFHKQQRVD GSLDIIRNDF RLVNKRVLEH 600
  601 APCSVGIFVD RGLGGSCHVS ASNVSYCIAV LFFGGGDDRE ALAYGARMAE HPGIQLVVIH 660
  661 FLVEPNIAGK ITKVDVGDSS SNNSISDSED GEFLAEFKLK TANDDSIIYE ERIVKDAEET 720
  721 VATIREINFC NLFLVGRRPA GELGFALERS ECPELGPVGG LLASQDFRTT ASVLVMQQYH 780
  781 NGVPINFVPE MEEHSRDGDT ESS