YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92869618
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METKKVQAED EESLPTSTTP LLLNNINTSS SQNKPTLLLN LITCMSLITA ITFSLLFFSL  60
   61 SPPSTTTATA RHLNKLHHPT VILISSDGFR FGYQHKTSTP NIHRLITNGT EALTGLIPVF 120
  121 PTLTFPNHYS IVTGLYPPHH GIINNFFFDP VTGEKFTMAS HESKWWLGQP LWQTVVNSGK 180
  181 IAATYFWPGS EVKKGSWTCD DVKYCKHYNG SVSFEDRVDT VLDYFDLDLD DIPVFMTLYF 240
  241 EDPDHQGHQV GPDDDEVTQA VARIDGIIGR LIHGLEKRGV FEDVSIIMVG DHGMVGTCDQ 300
  301 KLIFLDDLAS WVEIKSNWVH SYSPLLAIWP PSDSNYSLTD VVAKMNEGLS SGKVENGNKL 360
  361 KVFLKEDLPK RLHYAESDRI PPIIGLVHEG YKVEQSRTGK KECGGAHGYD NEFFSMRTIF 420
  421 IGHGPQFERG KKIPSFENVE IYNLITSILN IKGAPNNGSD SFPQSVLLPK A

Type	Start	End	Confidence
Cytoplasmic	1	36	0.96
Transmembrane Helix	37	58	0.92
Non-Cytoplasmic	59	471	0.98