YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92869039
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.74
Transmembrane Helix	23	43	0.73
Non-Cytoplasmic	44	62	0.54
Transmembrane Helix	63	83	0.53
Cytoplasmic	84	86	0.27
Transmembrane Helix	87	104	0.49
Non-Cytoplasmic	105	119	0.77
Transmembrane Helix	120	141	0.92
Cytoplasmic	142	150	0.67
Transmembrane Helix	151	169	0.83
Non-Cytoplasmic	170	192	0.91
Transmembrane Helix	193	213	0.90
Cytoplasmic	214	230	0.89
Transmembrane Helix	231	250	0.92
Non-Cytoplasmic	251	285	0.78
Transmembrane Helix	286	307	0.93
Cytoplasmic	308	327	0.71
Transmembrane Helix	328	349	0.85
Non-Cytoplasmic	350	453	0.56
Transmembrane Helix	454	477	0.72
Cytoplasmic	478	478	0.40
Transmembrane Helix	479	498	0.36
Non-Cytoplasmic	499	539	0.60
Transmembrane Helix	540	568	0.81
Cytoplasmic	569	678	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAPFEGIIQ DVKGRVKCYK QDWVCAICSG VSILAPTFYI FSASALPVIA FGEQLSRDTD  60
   61 GSLSTVETLA STAICGIIHS IIGGQPLLIL GVAEPTVIMY TYLYTFCKNT PQLGTKLFLA 120
  121 WAGWVCVWTA LMLILLAIFN ACNIITRFTR IAGELFGMLI TVLFFQEAIK GLVGEFSTPK 180
  181 VENPSSEELQ FQWRYTNGLL AVIFSFGLIV TAVKSRKART WRYGSRRLRG FIADYGVPVM 240
  241 VVLWTAVSYI MPDDIPNGVP RRLFCPLPWE PASLYHWTVV KDMWKVPVVY IFGAIIPALM 300
  301 IAGLYFFDHS VASQMAQQKE FNLQKPSAYH YDVFLLGIMT LICGLLGLPP SNGVLPQSPM 360
  361 HTKSLAVLRR QLIRKRVVKS AKECMEQQST SSELYGKMQA VFIEMDTAPT VKELETLKEA 420
  421 VMKSDTKGCA MEPFDPEKYI DTYLPVRVNE QRMTNLLQSL LIGLSIIGIS VIKRIPTSVL 480
  481 WGYFAYMAID SLPGNQFWER ILLLFVTPSR RFKILQDTHA SFVETVPFKT IAGFTALQLA 540
  541 YFLFCFGVTW IPIGGILFPL PFFLLIILRE RLLPKIFKPN HLQELDASEY EEIIGAPCAV 600
  601 RSMSLRDREP RDSDNDGSSE DYYDAEILDE MTTNRGELKL RTVSFNDRNR SNSFNDRNHS 660
  661 NSFNDRNHSN SFNEDRHN