YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92868701
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.70
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKKWLASV LLLTAAMLTT TLGAFVGVNI GTDVSDMPSA SNVVAILKAN QITHVRLYDA  60
   61 NAHLLQALSK TNIDVMVGVT NEEVLRIGES PSAAAAWINK NVVAYVPSTN ITAIAVGSEV 120
  121 LSTIPNVAPV LVPAMNSLHK ALVAANLNFR VKVSTPQSMD IIPKPFPPST ATFNSSWNST 180
  181 IYQVLQFLRN TNSSFMLNAY PYYGYTKGDG IFPLEYALFR PLPSVKQIVD PNTLYHYNSM 240
  241 FDAMVDATYY SIDALNFKDI PVVVTETGWP SFGGANEPDA TAENAETYNN NMIQRVLNDS 300
  301 GPPSQPNIPI NTYIYELFNE DKRNGPVSEK NWGIVYTNGS AVYPLSYGGA SGQITGSGNS 360
  361 TGIFCVAKDG ADTDKLQNGL SWACGQGGAN CAPIQQGQRC YLPNNVKSHA SYAYNDYYQK 420
  421 NQGVGGTCDF DGTAEITSKD PSYGSCRFPG SSGAGGVSLP PTALGPSSSP FGASMNLQVS 480
  481 TLQYMISAIG VFFALMIL

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	478	0.99
Transmembrane Helix	479	497	0.65
Cytoplasmic	498	498	0.67