YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92868426
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.47
Transmembrane Helix	46	67	0.89
Non-Cytoplasmic	68	74	0.53
Transmembrane Helix	75	94	0.89
Cytoplasmic	95	99	0.48
Transmembrane Helix	100	122	0.78
Non-Cytoplasmic	123	135	0.65
Transmembrane Helix	136	157	0.87
Cytoplasmic	158	164	0.63
Transmembrane Helix	165	185	0.93
Non-Cytoplasmic	186	564	0.80
Transmembrane Helix	565	586	0.90
Cytoplasmic	587	594	0.87
Transmembrane Helix	595	616	0.94
Non-Cytoplasmic	617	625	0.80
Transmembrane Helix	626	649	0.86
Cytoplasmic	650	659	0.81
Transmembrane Helix	660	681	0.91
Non-Cytoplasmic	682	687	0.83
Transmembrane Helix	688	709	0.93
Cytoplasmic	710	744	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGAVIVAVA AAIGNLLQGW DNATIAGSIL YIKREFQLQS EPTVEGLIVA MSLIGATVVT  60
   61 TCSGALSDLF GRRPMLIISS LLYFLSSLVM FWSPNVYILL FARLLDGLGI GLAVTLVPLY 120
  121 ISEIAPPEIR GSLNTLPQFA GSAGMFFSYC MVFGMSLTKA PSWRLMLGVL SIPSLIYFAL 180
  181 TLLLLPESPR WLVSKGRMLE AKKVLQRLRG CQDVAGEMAL LVEGLGVGGD TSIEEYIIGP 240
  241 DNELADEEDP STGKDQIKLY GPEHGQSWVA RPVTGQSSVG LVSRKGSMAN PSGLVDPLVT 300
  301 LFGSVHEKLP ETGSMRSTLF PHFGSMFSVG GNQPRNEDWD EESLAREGDD YISDAAAGDS 360
  361 DDNLQSPLIS RQTTSMDKDM PLPAQGSLSN MRQGSLLQGN AGEPVGSTGI GGGWQLAWKW 420
  421 SEQEGPGGKK EGGFKRIYLH QEGGPGSIRA SVVSLPGGDV PTDGDVVQQA AALVSQPALY 480
  481 NKELMHQQPV GPAMIHPSET AAKGPSWNDL FEPGVKHALF VGVGLQILQQ FSGINGVLYY 540
  541 TPQILEQAGV GYLLSNLGLS STSSSFLISA VTTLLMLPCI AVAMRLMDIS GRRTLLLTTI 600
  601 PVLIVSLFIL VLGSLVDLGD TANASISTIS VVVYFCSFVM GFGPVPNILC AEIFPTRVRG 660
  661 LCIAICALTF WICDIIVTYS LPVMLNSVGL GGVFGLYAVV CCIAWVFVFL KVPETKGMPL 720
  721 EVIIEFFSVG AKQIDAAKHN CGQA